Stem-loop cin-mir-4020b

Accession

MI0015571

Description

Ciona intestinalis cin-mir-4020b precursor miRNA

Sequence

75 reads, 27 reads per million, 2 experiments

GUGUGGUUGGUUGGUGGUUGauggcguucuauaaguuacaauucACCCAUUCAUUCCCCGCACA
((((((.(((.(((((((((.((((.........))))))).))).))).)))....)))))).

Structure

-      ---U   U   -   -   a    guu 
 GUGUGG    UGG UGG UGG UUG uggc   c
 ||||||    ||| ||| ||| ||| ||||   u
 CACGCC    ACU ACC Acu aac auug   a
A      CCUU   U   C   u   -    aau 

Annotation confidence Not enough data

Genome context

scaffold_197: 39348-39411 [-]

Mature cin-miR-4020b-5p

• Accession: MIMAT0016533
• Description: Ciona intestinalis cin-miR-4020b-5p mature miRNA
• Sequence: 1 - GUGUGGUUGGUUGGUGGUUG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4020b-3p

• Accession: MIMAT0016534
• Description: Ciona intestinalis cin-miR-4020b-3p mature miRNA
• Sequence: 45 - ACCCAUUCAUUCCCCGCACA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39