Stem-loop cin-mir-4001b-1

Accession

MI0015519

Description

Ciona intestinalis cin-mir-4001b-1 precursor miRNA

Sequence

4900 reads, 1620 reads per million, 2 experiments

UGGAACUUGCAUGAACAGGCuguacacacacgauuccgccuuUUUUUUGCAAGUUACCACA
(((((((((((.(((.((((.................)))).)))..)))))))).)))..

Structure

--   -        -U   C    uguacac 
  UGG AACUUGCA  GAA AGGC       a
  ||| ||||||||  ||| ||||       c
  ACC UUGAACGU  UUU uccg       a
AC   A        UU   u    ccuuagc 

Annotation confidence Not enough data

Genome context

7q: 5412482-5412542 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from cin-mir-4001b-1

Mature cin-miR-4001b-5p

• Accession: MIMAT0016446
• Description: Ciona intestinalis cin-miR-4001b-5p mature miRNA
• Sequence: 1 - UGGAACUUGCAUGAACAGGC - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4001b-1-3p

• Accession: MIMAT0016447
• Description: Ciona intestinalis cin-miR-4001b-1-3p mature miRNA
• Sequence: 43 - UUUUUUGCAAGUUACCACA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39