Stem-loop cin-mir-4001c

Accession

MI0015514

Description

Ciona intestinalis cin-mir-4001c precursor miRNA

Sequence

78533 reads, 28663 reads per million, 2 experiments

CGGAACUUUCCAAGGAACAGgcuuaaugcauauagucggCCUGUUGCUGGGAAUUCCCA
.((((.((((((.(.((((((((..............)))))))).)))))))))))..

Structure

-C    C      A G        uaaugc 
  GGAA UUUCCA G AACAGgcu      a
  |||| |||||| | ||||||||       
  CCUU AAGGGU C UUGUCCgg      u
AC    -      - G        cugaua 

Annotation confidence High

Genome context

3p: 1538302-1538360 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from cin-mir-4001c

Mature cin-miR-4001c-5p

• Accession: MIMAT0016450
• Description: Ciona intestinalis cin-miR-4001c-5p mature miRNA
• Sequence: 1 - CGGAACUUUCCAAGGAACAG - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4001c-3p

• Accession: MIMAT0016451
• Description: Ciona intestinalis cin-miR-4001c-3p mature miRNA
• Sequence: 40 - CCUGUUGCUGGGAAUUCCCA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39