Stem-loop cin-mir-132-2

Accession

MI0015497

Description

Ciona intestinalis cin-mir-132-2 precursor miRNA

Literature search

1 open access papers mention cin-mir-132-2
(1 sentences)

Sequence

32 reads, 11 reads per million, 2 experiments

UAUGGCUUUUACAUUCCUGUGUguauauuaaugcaguacacacaguauguugccaug
((((((....((((..((((((((((.........)))))))))).)))).))))))

Structure

      UUUU    UC          auu 
UAUGGC    ACAU  CUGUGUguau   a
||||||    ||||  ||||||||||   a
guaccg    ugua  gacacacaug   u
      ---u    -u          acg 

Annotation confidence Not enough data

Genome context

scaffold_92: 102853-102909 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cin-mir-132-2

Mature cin-miR-132-5p

• Accession: MIMAT0016425
• Description: Ciona intestinalis cin-miR-132-5p mature miRNA
• Sequence: 1 - UAUGGCUUUUACAUUCCUGUGU - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39