Stem-loop cin-mir-4220

Accession

MI0015494

Description

Ciona intestinalis cin-mir-4220 precursor miRNA

Sequence

8050 reads, 2420.0 reads per million, 9 experiments

UAGUGCAAUUUGUUGUAGCUUGcuguuaauucaAGCUCAAUUCAAUUGCACUG
((((((((((.((((.((((((.........))))))))))..))))))))))

Structure

          -U    U      cug 
UAGUGCAAUU  GUUG AGCUUG   u
||||||||||  |||| ||||||   u
GUCACGUUAA  UAAC UCGAac   a
          CU    -      uua 

Annotation confidence High

Genome context

ref|NC_020176.1|: 1579635-1579687 [+]

Mature cin-miR-4220-5p

• Accession: MIMAT0016419
• Description: Ciona intestinalis cin-miR-4220-5p mature miRNA
• Sequence: 1 - UAGUGCAAUUUGUUGUAGCUUG - 22
• Evidence: experimental ; Illumina [1]

Mature cin-miR-4220-3p

• Accession: MIMAT0016420
• Description: Ciona intestinalis cin-miR-4220-3p mature miRNA
• Sequence: 34 - AGCUCAAUUCAAUUGCACUG - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39