Stem-loop cin-mir-182

Accession

MI0015490

Description

Ciona intestinalis cin-mir-182 precursor miRNA

Sequence

396 reads, 174 reads per million, 2 experiments

CUUGGCAAAAUAUAGAACUCacguuggauguuaaugagauccaGUGGGCUGUAUUUUGCCGAC
.((((((((((((((..(((((..(((((.((...)).)))))))))))))))))))))))).

Structure

C              AA     gu     g  a 
 UUGGCAAAAUAUAG  CUCac  uggau uu  
 ||||||||||||||  |||||  ||||| || a
 AGCCGUUUUAUGUC  GGGUG  accua ag  
C              --     --     g  u 

Annotation confidence Not enough data

Genome context

scaffold_36: 551325-551387 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cin-mir-182

Mature cin-miR-182-5p

• Accession: MIMAT0016411
• Description: Ciona intestinalis cin-miR-182-5p mature miRNA
• Sequence: 1 - CUUGGCAAAAUAUAGAACUC - 20
• Evidence: experimental ; Illumina [1]

Mature cin-miR-182-3p

• Accession: MIMAT0016412
• Description: Ciona intestinalis cin-miR-182-3p mature miRNA
• Sequence: 44 - GUGGGCUGUAUUUUGCCGAC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39