miRBase entry: cin-mir-3599

Stem-loop cin-mir-3599


Accession
MI0015488
Description
Ciona intestinalis cin-mir-3599 precursor miRNA


Sequence

18107 reads, 2735.0 reads per million, 9 experiments
AACAGUGACACCAUGUAUUGGCuccguggCGAUAUAUGAUGUCGAUGUG
.(((.(((((.(((((((((.(.....).))))))))).))))).))).

Structure
A   G     C         G u 
 ACA UGACA CAUGUAUUG C c
 ||| ||||| ||||||||| | c
 UGU GCUGU GUAUAUAGC g g
G   A     A         g u 


Annotation confidence High
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Genome context
ref|NW_004190365.1|: 26617-26665 [-]

Database links

Mature cin-miR-3599-5p

Accession MIMAT0016407
Description Ciona intestinalis cin-miR-3599-5p mature miRNA
Sequence 1 - AACAGUGACACCAUGUAUUGGC - 22
Evidence experimental
Illumina [1]

Mature cin-miR-3599-3p

Accession MIMAT0016408
Description Ciona intestinalis cin-miR-3599-3p mature miRNA
Sequence 30 - CGAUAUAUGAUGUCGAUGUG - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39