Stem-loop rno-mir-1912

Accession

MI0015450

Description

Rattus norvegicus rno-mir-1912 precursor miRNA

Sequence

1403 reads, 6 reads per million, 70 experiments

acuagucucuaggaugUGCUCAUUGCAUGGGCUAUGUagauuucuauuuaauaCACAGAACAUGCAGUGAGAacuugauagagauugg
.((((((((((....((.(((((((((((..((.((((.............)))).))..))))))))))).))....))))))))))

Structure

a          ggau  G           GG  A    gauuu 
 cuagucucua    gU CUCAUUGCAUG  CU UGUa     c
 ||||||||||    || |||||||||||  || ||||     u
 gguuagagau    ca GAGUGACGUAC  GA ACau     a
-          aguu  A           AA  C    aauuu 

Annotation confidence Not enough data

Genome context

chrX: 118130652-118130739 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-1912

Mature rno-miR-1912-5p

• Accession: MIMAT0017864
• Description: Rattus norvegicus rno-miR-1912-5p mature miRNA
• Sequence: 17 - UGCUCAUUGCAUGGGCUAUGU - 37
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-1912-3p

• Accession: MIMAT0017865
• Description: Rattus norvegicus rno-miR-1912-3p mature miRNA
• Sequence: 54 - CACAGAACAUGCAGUGAGA - 72
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249