Stem-loop rno-mir-9b-2

Accession

MI0015439

Description

Rattus norvegicus rno-mir-9b-2 precursor miRNA

Literature search

71 open access papers mention rno-mir-9b-2
(630 sentences)

Sequence

177 reads, 1 reads per million, 67 experiments

agcacuccucggugaucuugaaggaguuuuuacuUUCGGUUAUCUAGCUUUAUgaagaccaauacacucAUACAGCUAGAUAACCAAagauaacaacucgcuucccucacaaggcugu
.(((..(((..((((....(((((((((.(((((((.((((((((((((.(((((............))))).)))))))))))))))).))).))))).))))..)))).))).)))

Structure

a   cu   cg    ucuu    -     u   -    C            U     agacc 
 gca  ccu  guga    gaag gaguu uua cuUU GGUUAUCUAGCU UAUga     a
 |||  |||  ||||    |||| ||||| ||| |||| |||||||||||| |||||      
 ugu  gga  cacu    cuuc cucaa aau gaAA CCAAUAGAUCGA AUAcu     a
-   -c   -a    --cc    g     c   a    -            C     cacau 

Annotation confidence Not enough data

Genome context

chr2: 11884658-11884775 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-9b-2

Mature rno-miR-9b-5p

• Accession: MIMAT0017835
• Description: Rattus norvegicus rno-miR-9b-5p mature miRNA
• Sequence: 35 - UUCGGUUAUCUAGCUUUAU - 53
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-9b-3p

• Accession: MIMAT0017836
• Description: Rattus norvegicus rno-miR-9b-3p mature miRNA
• Sequence: 70 - AUACAGCUAGAUAACCAA - 87
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249