Stem-loop rno-mir-218b

Accession

MI0015428

Description

Rattus norvegicus rno-mir-218b precursor miRNA

Literature search

13 open access papers mention rno-mir-218b
(29 sentences)

Sequence

uguagaaagcugcgugacguuccauggugcuugacggaaccauguuuuacucauaccucgcaagcaCAUGGUUAGAUCAAGCACAAcagaaaaucucgcuacguuaucacuaca
(((((..(((.(((.((..(((....((((((((...((((((((....................))))))))...))))))))....)))..)).)))...)))....)))))

Structure

     --aa   --u   u  cg   caug        cgg        uuuacucau 
uguag    agc   gcg ga  uuc    gugcuuga   aaccaugu         a
|||||    |||   ||| ||  |||    ||||||||   ||||||||          
acauc    uug   cgc cu  aag    CACGAACU   UUGGUACa         c
     acua   cau   u  aa   acAA        AGA        cgaacgcuc 

Annotation confidence Not enough data

Genome context

chr14: 66923083-66923196 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-218b

Mature rno-miR-218b

• Accession: MIMAT0017838
• Description: Rattus norvegicus rno-miR-218b mature miRNA
• Sequence: 67 - CAUGGUUAGAUCAAGCACAA - 86
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249