Stem-loop rno-mir-9b-3

Accession

MI0015426

Description

Rattus norvegicus rno-mir-9b-3 precursor miRNA

Literature search

71 open access papers mention rno-mir-9b-3
(630 sentences)

Sequence

186 reads, 1 reads per million, 69 experiments

gcacgcagaaguuguuagagucauuucuacuUUCGGUUAUCUAGCUUUAUgacggcucuguggcacucAUACAGCUAGAUAACCAAagagagaaacgggccucccauucgccggc
((.((..(((..((..((.(((.(((((.((((.((((((((((((.(((((..(((....)))..))))).))))))))))))))))..)))))..)))))..)))))..))))

Structure

  a  ca   gu  uu  a   -a     -a    C            U     cg   c 
gc cg  gaa  ug  ag guc  uuucu  cuUU GGUUAUCUAGCU UAUga  gcu u
|| ||  |||  ||  || |||  |||||  |||| |||||||||||| |||||  |||  
cg gc  cuu  ac  uc cgg  aaaga  gaAA CCAAUAGAUCGA AUAcu  cgg g
  -  cg   --  cc  -   gc     ga    -            C     ca   u 

Annotation confidence Not enough data

Genome context

chr1: 141229342-141229456 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-9b-3

Mature rno-miR-9b-5p

• Accession: MIMAT0017835
• Description: Rattus norvegicus rno-miR-9b-5p mature miRNA
• Sequence: 32 - UUCGGUUAUCUAGCUUUAU - 50
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-9b-3p

• Accession: MIMAT0017836
• Description: Rattus norvegicus rno-miR-9b-3p mature miRNA
• Sequence: 69 - AUACAGCUAGAUAACCAA - 86
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249