Stem-loop rno-mir-3562

Accession

MI0015424

Description

Rattus norvegicus rno-mir-3562 precursor miRNA

Literature search

2 open access papers mention rno-mir-3562
(8 sentences)

Sequence

17 reads, 1 reads per million, 13 experiments

ucugguauaucaggcuugcugugauUUGGGGCAGUGGCUGGAUGGGAggggacucacagcccuaucucuagugcaaccccuguccccacaggucuagagccugagauccaga
(((((....((((((((.(((((....(((((((.((.((.((((((((((........)))).))))..)).)).)).)))))))))))).....))))))))...)))))

Structure

     uaua        ----g     auUU       U  C  G  --    -    acu 
ucugg    ucaggcuu     cugug    GGGGCAG GG UG AU  GGGA gggg   c
|||||    ||||||||     |||||    ||||||| || || ||  |||| ||||    
agacc    aguccgag     gacac    cccuguc cc ac ug  cucu uccc   a
     -uag        aucug     ----       c  a  g  au    a    gac 

Annotation confidence Not enough data

Genome context

chr10: 109246744-109246855 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-3562

Mature rno-miR-3562

• Accession: MIMAT0017832
• Description: Rattus norvegicus rno-miR-3562 mature miRNA
• Sequence: 26 - UUGGGGCAGUGGCUGGAUGGGA - 47
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249