Stem-loop rno-mir-3550

Accession

MI0015406

Description

Rattus norvegicus rno-mir-3550 precursor miRNA

Literature search

1 open access papers mention rno-mir-3550
(1 sentences)

Sequence

48 reads, 1 reads per million, 32 experiments

cuucuggagugccuggugaggggugguuugagcaguguggggcaugggguggcccucacugggcacaccaaccaagCCGAGCCCAUCCCUGCCCUAGgaauucaacccagaaga
(((((((..(((((((..((((((((..........((..(((.(((((((((((.....)))).))))..))).)))..))))))))))..)).)))....))..))))))).

Structure

-       ag  ----   -  ug        uuugagcagu  gg   a   --    -    u 
 cuucugg  ug    ccu gg  aggggugg          gu  ggc ugg  ggug gccc c
 |||||||  ||    ||| ||  ||||||||          ||  ||| |||  |||| |||| a
 gaagacc  ac    gGA CC  UCCCUACC          CG  CCg acc  ccac cggg c
a       ca  uuaa   U  CG        ----------  AG   a   aa    a    u 

Annotation confidence Not enough data

Genome context

chr19: 26041428-26041541 [-]

Mature rno-miR-3550

• Accession: MIMAT0017808
• Description: Rattus norvegicus rno-miR-3550 mature miRNA
• Sequence: 77 - CCGAGCCCAUCCCUGCCCUAG - 97
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249