Stem-loop sja-mir-2e

Accession

MI0015310

Description

Schistosoma japonicum sja-mir-2e precursor miRNA

Literature search

7 open access papers mention sja-mir-2e
(41 sentences)

Sequence

ccaccgcucuUACCAACUUAGACUGAGUUAUacugcuacuguaagcuuuguaUAUCACAGUCCAAGCUUUGGUaaguuuugau
........(((((((((((.(((((.(.(((((.(((......)))...))))).).))))).)))..)))))))).......

Structure

ccaccgcu        --   A     A U     --u   ac 
        cuUACCAA  CUU GACUG G UAUac   gcu  u
        ||||||||  ||| ||||| | |||||   |||   
        gaaUGGUU  GAA CUGAC C AUaug   cga  g
-uaguuuu        UC   C     A U     uuu   au 

Annotation confidence Low

Genome context

CABF01007682.1: 2769-2851 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from sja-mir-2e

Mature sja-miR-2e-5p

• Accession: MIMAT0016294
• Description: Schistosoma japonicum sja-miR-2e-5p mature miRNA
• Sequence: 11 - UACCAACUUAGACUGAGUUAU - 31
• Evidence: experimental ; Illumina [1]

Mature sja-miR-2e-3p

• Accession: MIMAT0016295
• Description: Schistosoma japonicum sja-miR-2e-3p mature miRNA
• Sequence: 53 - UAUCACAGUCCAAGCUUUGGU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596