Stem-loop ppy-let-7c

Accession

MI0014783

Description

Pongo pygmaeus ppy-let-7c precursor miRNA

Literature search

2 open access papers mention ppy-let-7c
(4 sentences)

Sequence

gcauccggguUGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaacuguacaaccuucuagcuuuccuuggagc
((.((((((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))..))))))))

Structure

  a      uU   G   U             ua  g ua  c 
gc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
|| ||||||  ||| ||| |||||||||||||  || |  || c
cg agguuc  uuc auc uccaacaugucaa  uu a  gu  
  -      cu   g   u             --  g gg  c 

Annotation confidence Not enough data

Genome context

chr21: 16253338-16253421 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-let-7c

Mature ppy-let-7c

• Accession: MIMAT0015723
• Description: Pongo pygmaeus ppy-let-7c mature miRNA
• Sequence: 11 - UGAGGUAGUAGGUUGUAUGGUU - 32
• Evidence: not_experimental

References

1. PubMed ID: 20214803
   Genome-wide comparative analysis of microRNAs in three non-human primates
   Brameier M
   BMC Res Notes (2010) 3:64