Stem-loop ssc-mir-450c

Accession

MI0014776

Description

Sus scrofa ssc-mir-450c precursor miRNA

Literature search

4 open access papers mention ssc-mir-450c
(4 sentences)

Sequence

430 reads, 99 reads per million, 12 experiments

ggcacuaaacuauUUUUGCGAUGUGUUCCUAAUACguaaucuaaguguAUUGGGAACAUUUUGCAUUCGUaguuuuguguc
(((((.(((((((...(((((.((((((((((((((.........)))))))))))))).)))))...))))))).)))))

Structure

     u       UUU     U              uaa 
ggcac aaacuau   UGCGA GUGUUCCUAAUACg   u
||||| |||||||   ||||| ||||||||||||||   c
cugug uuugaUG   ACGUU UACAAGGGUUAugu   u
     u       CUU     U              gaa 

Annotation confidence Low

Genome context

chrUScaf3177: 4053-4133 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ssc-mir-450c

Mature ssc-miR-450c-5p

• Accession: MIMAT0015717
• Description: Sus scrofa ssc-miR-450c-5p mature miRNA
• Sequence: 14 - UUUUGCGAUGUGUUCCUAAUAC - 35
• Evidence: experimental ; Illumina [2]

Mature ssc-miR-450c-3p

• Accession: MIMAT0015718
• Description: Sus scrofa ssc-miR-450c-3p mature miRNA
• Sequence: 49 - AUUGGGAACAUUUUGCAUUCGU - 70
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328