Stem-loop aly-MIR169g

Accession

MI0014551

Description

Arabidopsis lyrata aly-MIR169g precursor miRNA

Sequence

27 reads, 941 reads per million, 1 experiments

augaugaugaugagucucuaguuguaucagagggucuugcauggaagaguagagaaugagguUGAGCCAAGGAUGACUUGCCGgguuuuuuaccaaugaaucuuaacugauuuugguguccgGCAAGUUGACCUUGGCUCUGUuuccuucucuucuuuucgaugucagacuccgcgauauauaucuauuucaucaucgucau
((((((((((((((........((((((.(.((((((.((((.((((((.((((((.((((..(((((((((..(((((((((((.....(((((..(((((......)))))))))))))))))))))..)))))))))..)))).)))))).)))))).)))).)))))))..)))))).......))))))))))))))

Structure

              ucucuagu      -a a      u    g      u      u    uU         AU           uuuuu     au     uu 
augaugaugaugag        uguauc  g gggucu gcau gaagag agagaa gagg  GAGCCAAGG  GACUUGCCGgg     uacca  gaauc  a
||||||||||||||        ||||||  | |||||| |||| |||||| |||||| ||||  |||||||||  |||||||||||     |||||  |||||   
uacugcuacuacuu        auauag  c cucaga ugua cuuuuc ucucuu cuuU  CUCGGUUCC  UUGAACGgccu     guggu  uuuag  a
              -uaucuau      cg -      c    g      u      c    GU         AG           -----     --     uc 

Annotation confidence Not enough data

Genome context

GL348719.1: 9192991-9193192 [+]

Mature aly-miR169g-5p

• Accession: MIMAT0017497
• Description: Arabidopsis lyrata aly-miR169g-5p mature miRNA
• Sequence: 63 - UGAGCCAAGGAUGACUUGCCG - 83
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR169g-3p

• Accession: MIMAT0017498
• Description: Arabidopsis lyrata aly-miR169g-3p mature miRNA
• Sequence: 123 - GCAAGUUGACCUUGGCUCUGU - 143
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103