Stem-loop aly-MIR156c

Accession

MI0014504

Description

Arabidopsis lyrata aly-MIR156c precursor miRNA

Sequence

233 reads, 8124 reads per million, 1 experiments

gcauagaaacUGACAGAAGAGAGUGAGCACacaaaggcacuuugcauguucgaugcauuugcuucucuugcguGCUCACUGCUCUAUCUGUCAGAuuucggc
.....(((((((((((((((((((((((((.((((((((...(((((.....)))))..)))))...))).))))))))).)))).)))))))).))))...

Structure

gcaua    -        -    -         a   ---     cuu     g 
     gaaa cUGACAGA AGAG AGUGAGCAC caa   aggca   ugcau u
     |||| |||||||| |||| ||||||||| |||   |||||   ||||| u
     cuuu GACUGUCU UCUC UCACUCGug guu   uucgu   acgua c
--cgg    A        A    G         c   cuc     -uu     g 

Annotation confidence High

Genome context

GL348719.1: 4138775-4138876 [+]

Mature aly-miR156c-5p

• Accession: MIMAT0017401
• Description: Arabidopsis lyrata aly-miR156c-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [1], SOLiD [2]

Mature aly-miR156c-3p

• Accession: MIMAT0017402
• Description: Arabidopsis lyrata aly-miR156c-3p mature miRNA
• Sequence: 74 - GCUCACUGCUCUAUCUGUCAGA - 95
• Evidence: experimental ; Illumina [1], SOLiD [2]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089


2. PubMed ID: 20407023
   Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
   "Ma Z, Coruh C, Axtell MJ"
   "Plant Cell (2010) 22:1090-1103