Stem-loop api-mir-2765

Accession

MI0014005

Description

Acyrthosiphon pisum api-mir-2765 precursor miRNA

Literature search

1 open access papers mention api-mir-2765
(2 sentences)

Sequence

13430 reads, 699.0 reads per million, 5 experiments

UGGUAACUCCAAACCAUUGCCGGcguuuuauuuuguauccCGCAAUGGUUGGAAGUUCCUCA
.((.((((((((.(((((((.((.((..........)).))))))))))))).))))))...

Structure

--U  U    -    A       C  c  uuua 
   GG AACU CCAA CCAUUGC GG gu    u
   || |||| |||| ||||||| || ||     
   CC UUGA GGUU GGUAACG Cc ua    u
ACU  -    A    -       -  c  uguu 

Annotation confidence High

Genome context

GL349988.1: 223177-223238 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-mir-2765

Mature api-miR-2765-5p

• Accession: MIMAT0014787
• Description: Acyrthosiphon pisum api-miR-2765-5p mature miRNA
• Sequence: 1 - UGGUAACUCCAAACCAUUGCCGG - 23
• Evidence: experimental ; Illumina [1]

Mature api-miR-2765-3p

• Accession: MIMAT0057315
• Description: Acyrthosiphon pisum api-miR-2765-3p mature miRNA
• Sequence: 41 - CGCAAUGGUUGGAAGUUCCUCA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281