Stem-loop api-mir-998

Accession

MI0013953

Description

Acyrthosiphon pisum api-mir-998 precursor miRNA

Sequence

33522 reads, 1375.0 reads per million, 5 experiments

GCUGAAUUUUACGAGUGCCGCAuguaauguaugucuugUAGCACCAUGGAAUUCAGCUG
(((((((((((.(.((((.(((..............))).))))).)))))))))))..

Structure

--           C A    C   uguaau 
  GCUGAAUUUUA G GUGC GCA      g
  ||||||||||| | |||| |||       
  CGACUUAAGGU C CACG Ugu      u
GU           A -    A   ucugua 

Annotation confidence High

Genome context

GL349823.1: 315079-315137 [-]

Mature api-miR-998-5p

• Accession: MIMAT0057294
• Description: Acyrthosiphon pisum api-miR-998-5p mature miRNA
• Sequence: 1 - GCUGAAUUUUACGAGUGCCGCA - 22
• Evidence: experimental ; Illumina [1]

Mature api-miR-998-3p

• Accession: MIMAT0014747
• Description: Acyrthosiphon pisum api-miR-998-3p mature miRNA
• Sequence: 39 - UAGCACCAUGGAAUUCAGCUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281