Stem-loop api-mir-279b

Accession

MI0013925

Description

Acyrthosiphon pisum api-mir-279b precursor miRNA

Sequence

22921 reads, 752.0 reads per million, 6 experiments

GUGGGUGUUUUUCUAGUCGACAcugaauauucaaagcugUGACUAGAUCUACACUCAUCA
((((((((...(((((((.(((((..........)).))))))))))...))))))))..

Structure

--        UUU       G   -  gaau 
  GUGGGUGU   UCUAGUC ACA cu    a
  ||||||||   ||||||| ||| ||     
  UACUCACA   AGAUCAG Ugu ga    u
AC        UCU       -   c  aacu 

Annotation confidence High

Genome context

GL349674.1: 320342-320401 [-]

Mature api-miR-279b-5p

• Accession: MIMAT0057280
• Description: Acyrthosiphon pisum api-miR-279b-5p mature miRNA
• Sequence: 1 - GUGGGUGUUUUUCUAGUCGACA - 22
• Evidence: experimental ; Illumina [1]

Mature api-miR-279b-3p

• Accession: MIMAT0014725
• Description: Acyrthosiphon pisum api-miR-279b-3p mature miRNA
• Sequence: 40 - UGACUAGAUCUACACUCAUCA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281