Stem-loop api-mir-279a

Accession

MI0013924

Description

Acyrthosiphon pisum api-mir-279a precursor miRNA

Sequence

171614 reads, 10579.0 reads per million, 6 experiments

AUGGGUGUGUGUCUAGUGACAugcguuuuauauuugacagacaUGACUAGAUCCACACUCAUCC
(((((((((.(((((((..((((((((........))).).))))))))))).)))))))))..

Structure

--         U       GA    - -   uua 
  AUGGGUGUG GUCUAGU  CAug c guu   u
  ||||||||| |||||||  |||| | |||    
  UACUCACAC UAGAUCA  GUac g cag   a
CC         C       --    a a   uuu 

Annotation confidence High

Genome context

GL349806.1: 546384-546447 [-]

Mature api-miR-279a-5p

• Accession: MIMAT0057279
• Description: Acyrthosiphon pisum api-miR-279a-5p mature miRNA
• Sequence: 1 - AUGGGUGUGUGUCUAGUGACA - 21
• Evidence: experimental ; Illumina [1]

Mature api-miR-279a-3p

• Accession: MIMAT0014724
• Description: Acyrthosiphon pisum api-miR-279a-3p mature miRNA
• Sequence: 44 - UGACUAGAUCCACACUCAUCC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281