Stem-loop api-mir-252a

Accession

MI0013919

Description

Acyrthosiphon pisum api-mir-252a precursor miRNA

Literature search

3 open access papers mention api-mir-252a
(4 sentences)

Sequence

5820 reads, 944.0 reads per million, 6 experiments

CUAAGUACUAGUGCCGCGGGAGugauauccguuuuuuguaucuccugcagcucaagugcuuauca
.((((((((.(.((.(((((((..(((.........)))..))))))).)).).))))))))...

Structure

--C        A U  C       ug   ucc 
   UAAGUACU G GC GCGGGAG  aua   g
   |||||||| | || |||||||  |||   u
   auucguga c cg cguccuc  ugu   u
acu        a u  a       ua   uuu 

Annotation confidence Not enough data

Genome context

GL349872.1: 519999-520063 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from api-mir-252a

Mature api-miR-252a-5p

• Accession: MIMAT0014719
• Description: Acyrthosiphon pisum api-miR-252a-5p mature miRNA
• Sequence: 1 - CUAAGUACUAGUGCCGCGGGAG - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281