Stem-loop api-mir-1000

Accession

MI0013910

Description

Acyrthosiphon pisum api-mir-1000 precursor miRNA

Sequence

361 reads, 32.0 reads per million, 3 experiments

AUAUUGUCCUGUCACAGCAGUAaugucacguaucugaaucguaCUGCUGUCGCGGGACAUUUUCG
....((((((((.(((((((((...(((......)))....))))))))).))))))))......

Structure

--AUAU        C         -aug   cg 
      UGUCCUGU ACAGCAGUA    uca  u
      |||||||| |||||||||    |||   
      ACAGGGCG UGUCGUCau    agu  a
GCUUUU        C         gcua   cu 

Annotation confidence High

Genome context

GL349899.1: 512678-512742 [+]

Mature api-miR-1000-5p

• Accession: MIMAT0014711
• Description: Acyrthosiphon pisum api-miR-1000-5p mature miRNA
• Sequence: 1 - AUAUUGUCCUGUCACAGCAGUA - 22
• Evidence: experimental ; Illumina [1]

Mature api-miR-1000-3p

• Accession: MIMAT0057268
• Description: Acyrthosiphon pisum api-miR-1000-3p mature miRNA
• Sequence: 44 - CUGCUGUCGCGGGACAUUUUCG - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20444247
   Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
   Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
   BMC Genomics (2010) 11:281