Stem-loop tgu-mir-2988

Accession

MI0013687

Description

Taeniopygia guttata tgu-mir-2988 precursor miRNA

Sequence

cCCUCUUCUCUGGAGCCAGGCUGGgagagcugggaauguucaccuggagaggaaaaugcuccagggagagcucagagccuagaggggauccaggagagcuggagaggg
((((((((((((((.((...(((((....(((((....(((.(((((((.........))))))))))..)))))..)))))...)).))))))......))))))))

Structure

        ------      G  AGG     agag     aaug   a       agg 
cCCUCUUC      UCUGGA CC   CUGGg    cuggg    uuc ccuggag   a
||||||||      |||||| ||   |||||    |||||    ||| |||||||   a
gggagagg      ggaccu gg   gaucc    gacuc    gag ggaccuc   a
        ucgaga      a  gga     --ga     --ga   -       gua 

Annotation confidence Low

Genome context

chr2: 2951825-2951932 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-2988

Mature tgu-miR-2988

• Accession: MIMAT0014498
• Description: Taeniopygia guttata tgu-miR-2988 mature miRNA
• Sequence: 2 - CCUCUUCUCUGGAGCCAGGCUGG - 24
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762