miRBase entry: aae-mir-iab-4-2

Stem-loop aae-mir-iab-4-2


Accession
MI0013531
Description
Aedes aegypti aae-mir-iab-4-2 precursor miRNA


Sequence

123 reads, 7 reads per million, 2 experiments
gcuucaugaACGUAUACUGAAUGUAUCCUGAgugcuaucuaucCGGUAUACCUUCAGUAUACGUAACaggaggc
(((((.((.((((((((((((.((((((.((..(....)..)).)).)))).))))))))))))..)).)))))

Structure
     a  -a            U    -  U  gu c 
gcuuc ug  ACGUAUACUGAA GUAU CC GA  g u
||||| ||  |||||||||||| |||| || ||  |  
cggag aC  UGCAUAUGACUU CAUA GG cu  c a
     g  AA            C    U  C  au u 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.708: 50256-50329 [+]

Database links

Mature aae-miR-iab-4-5p

Accession MIMAT0014278
Description Aedes aegypti aae-miR-iab-4-5p mature miRNA
Sequence 10 - ACGUAUACUGAAUGUAUCCUGA - 31
Evidence experimental
454 [1], Illumina [2]

Mature aae-miR-iab-4-3p

Accession MIMAT0016977
Description Aedes aegypti aae-miR-iab-4-3p mature miRNA
Sequence 44 - CGGUAUACCUUCAGUAUACGUAAC - 67
Evidence experimental
454 [1]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119