Stem-loop aae-mir-9b

Accession

MI0013530

Description

Aedes aegypti aae-mir-9b precursor miRNA

Literature search

4 open access papers mention aae-mir-9b
(10 sentences)

Sequence

462322 reads, 2288.0 reads per million, 86 experiments

ucacguuuauuggaUCUUUGGUGAUUUUAGCUGUAUGCugauacguuucugauugcaUAUAGCUUUAUCACCAAAAACCUaaugaaugguga
(((((((((((((...(((((((((...((((((((((................))))))))))..)))))))))...))))))))).))))

Structure

    -         aUC         UUU          ugauacg 
ucac guuuauugg   UUUGGUGAU   AGCUGUAUGC       u
|||| |||||||||   |||||||||   ||||||||||        
agug uaaguaaUC   AAACCACUA   UCGAUAUacg       u
    g         CAA         -UU          uuagucu 

Annotation confidence High

Genome context

ref|NW_001811557.1|: 213570-213661 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from aae-mir-9b

Mature aae-miR-9b-5p

• Accession: MIMAT0014324
• Description: Aedes aegypti aae-miR-9b-5p mature miRNA
• Sequence: 15 - UCUUUGGUGAUUUUAGCUGUAUGC - 38
• Evidence: experimental ; 454 [1]

Mature aae-miR-9b-3p

• Accession: MIMAT0057367
• Description: Aedes aegypti aae-miR-9b-3p mature miRNA
• Sequence: 58 - UAUAGCUUUAUCACCAAAAACCU - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581