miRBase entry: aae-mir-309b

Stem-loop aae-mir-309b


Accession
MI0013526
Description
Aedes aegypti aae-mir-309b precursor miRNA

Literature search
2 open access papers mention aae-mir-309b
(3 sentences)

Sequence

6 reads, 1 reads per million, 2 experiments
uuaugCGUCAAACUCCGUUCAGUUGGUGgagucauuuuccaagucaUCACUGGGCAUAGUUUGUCGCAuaa
.((((((.((((((..(((((((((((((((.....)))))..)))..)))))))..)))))).)))))).

Structure
u      U      CC       --   --     u 
 uaugCG CAAACU  GUUCAGU  UGG  UGgag c
 |||||| ||||||  |||||||  |||  ||||| a
 auACGC GUUUGA  CGGGUCA  acu  accuu u
a      U      UA       CU   ga     u 


Annotation confidence Not enough data
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Genome context
supercont1.464: 825629-825699 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from aae-mir-309b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aae-miR-309b-5p

Accession MIMAT0014319
Description Aedes aegypti aae-miR-309b-5p mature miRNA
Sequence 6 - CGUCAAACUCCGUUCAGUUGGUG - 28
Evidence experimental
454 [1]

Mature aae-miR-309b-3p

Accession MIMAT0014320
Description Aedes aegypti aae-miR-309b-3p mature miRNA
Sequence 47 - UCACUGGGCAUAGUUUGUCGCA - 68
Evidence experimental
454 [1]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581