Stem-loop aae-mir-2c

Accession

MI0013514

Description

Aedes aegypti aae-mir-2c precursor miRNA

Literature search

6 open access papers mention aae-mir-2c
(14 sentences)

Sequence

572508 reads, 2497.0 reads per million, 83 experiments

ugcguugGCAUCAAAUUUGGUUGUUUUAGUACgaccucuuugaaaccccUAUCACAGCCAGCUUUGAUGAGCaacgca
(((((((.(((((((.((((((((..(((...................)))..)))))))).)))))))..)))))))

Structure

       -G       U        UU   UACgaccu 
ugcguug  CAUCAAA UUGGUUGU  UAG        c
|||||||  ||||||| ||||||||  |||        u
acgcaaC  GUAGUUU GACCGACA  AUc        u
       GA       C        CU   cccaaagu 

Annotation confidence High

Genome context

ref|NW_001810981.1|: 889085-889162 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from aae-mir-2c

Mature aae-miR-2c-5p

• Accession: MIMAT0057361
• Description: Aedes aegypti aae-miR-2c-5p mature miRNA
• Sequence: 8 - GCAUCAAAUUUGGUUGUUUUAGUAC - 32
• Evidence: experimental ; 454 [1]

Mature aae-miR-2c-3p

• Accession: MIMAT0014308
• Description: Aedes aegypti aae-miR-2c-3p mature miRNA
• Sequence: 50 - UAUCACAGCCAGCUUUGAUGAGC - 72
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581