Stem-loop aae-mir-7

Accession

MI0013496

Description

Aedes aegypti aae-mir-7 precursor miRNA

Literature search

1 open access papers mention aae-mir-7
(1 sentences)

Sequence

63619 reads, 3173 reads per million, 2 experiments

ucgcaauauuuuguaUGGAAGACUAGUGAUUUUGUUGUuuugcuuacgauaauaacaauaaaucucaagucuuucuacaaaguuugcug
..((((.((((((((.((((((((.(.(((((((((((((((....))).)))))))..))))).).))))))))))))))))))))..

Structure

uc    u        U        A U     --       -   c 
  gcaa auuuugua GGAAGACU G GAUUU  UGUUGUu uug u
  |||| |||||||| |||||||| | |||||  ||||||| |||  
  cguu ugaaacau cuuucuga c cuaaa  acaauaa agc u
gu    -        -        a u     ua       u   a 

Annotation confidence Not enough data

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.1359: 46026-46114 [+]

Mature aae-miR-7

• Accession: MIMAT0014290
• Description: Aedes aegypti aae-miR-7 mature miRNA
• Sequence: 16 - UGGAAGACUAGUGAUUUUGUUGU - 38
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119