miRBase entry: aae-mir-279

Stem-loop aae-mir-279


Accession
MI0013494
Description
Aedes aegypti aae-mir-279 precursor miRNA


Sequence

37116 reads, 1911 reads per million, 2 experiments
acaucccaacgguugucgaugggugugaaucuaguguuucacaugauuuucgauagccugUGACUAGAUCCACACUCAUUAAcaaaaguugccgg
......((((..((((.((((((((((.((((((....(((((.(.((......))).))))))))))).)))))))))).))))..))))....

Structure
acaucc    gg    c          a      uguu     u a  uu 
      caac  uugu gaugggugug aucuag    ucaca g uu  c
      ||||  |||| |||||||||| ||||||    ||||| | ||   
      guug  aacA UUACUCACAC UAGAUC    AGUgu c ga  g
--ggcc    aa    A          C      ----     c -  ua 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.437: 572245-572339 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aae-mir-279
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aae-miR-279

Accession MIMAT0014288
Description Aedes aegypti aae-miR-279 mature miRNA
Sequence 61 - UGACUAGAUCCACACUCAUUAA - 82
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119