miRBase entry: aae-mir-2941-1

Stem-loop aae-mir-2941-1


Accession
MI0013491
Description
Aedes aegypti aae-mir-2941-1 precursor miRNA

Literature search
2 open access papers mention aae-mir-2941-1
(5 sentences)

Sequence

27 reads, 2 reads per million, 2 experiments
auggauuaaguuguaccacuuucgugguguuuagacguauuacaugauuuuuugaacauaacugUAGUACGGCUAGAACUCCACGGauguuggcaauauagucauc
...(((((.(((((.(.((.(((((((.((((((.(((((((((..................))))))))).)).)))).))))))).)).)))))).)))))...

Structure
aug     a     a c  u       u    -  a         ugauuuuu 
   gauua guugu c ac uucgugg guuu ag cguauuaca        u
   ||||| ||||| | || ||||||| |||| || |||||||||         
   cugau uaacg g ug aGGCACC CAAG UC GCAUGAUgu        g
cua     a     - u  u       U    A  G         caauacaa 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.385: 413127-413232 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from aae-mir-2941-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aae-miR-2941

Accession MIMAT0014286
Description Aedes aegypti aae-miR-2941 mature miRNA
Sequence 65 - UAGUACGGCUAGAACUCCACGG - 86
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119