Stem-loop aae-mir-2940

Accession

MI0013489

Description

Aedes aegypti aae-mir-2940 precursor miRNA

Literature search

9 open access papers mention aae-mir-2940
(56 sentences)

Sequence

78756 reads, 4022 reads per million, 2 experiments

cauUGGUUUAUCUUAUCUGUCGAGGCaaguuauuuuaccggauaguguuucuuuucgugagcaaucaccacuauccagcucuucuuGUCGACAGGGAGAUAAAUCACUg
...(((((((((((.(((((((..(((((..........((((((((.........((((....)))))))))))).......)))))))))))))))))))))))...

Structure

cau           A       AG     uuauuuuacc        uuucuuuuc    g 
   UGGUUUAUCUU UCUGUCG  GCaag          ggauagug         guga c
   ||||||||||| |||||||  |||||          ||||||||         ||||  
   ACUAAAUAGAG GGACAGC  UGuuc          ccuaucac         cacu a
gUC           -       --     ---uucucga        ---------    a 

Annotation confidence High

Comments

This miRNA was experimentally identified in the closely related Aedes albopictus, for which there was no genome sequence, and therefore mapped to the Aedes aegypti genome [1].

Genome context

supercont1.222: 643957-644065 [+]

Mature aae-miR-2940-5p

• Accession: MIMAT0014283
• Description: Aedes aegypti aae-miR-2940-5p mature miRNA
• Sequence: 4 - UGGUUUAUCUUAUCUGUCGAGGC - 26
• Evidence: experimental ; Illumina [1]

Mature aae-miR-2940-3p

• Accession: MIMAT0014284
• Description: Aedes aegypti aae-miR-2940-3p mature miRNA
• Sequence: 87 - GUCGACAGGGAGAUAAAUCACU - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119