Stem-loop aae-mir-31

Accession

MI0013483

Description

Aedes aegypti aae-mir-31 precursor miRNA

Literature search

3 open access papers mention aae-mir-31
(4 sentences)

Sequence

623349 reads, 2282.0 reads per million, 86 experiments

cgagauuuugggagauugaaggucguguuugcagagugaaauuggcaacuUGGCAAGAUGUUGGCAUAGCUGAaaguuuugaguuUAGCUAUUCAACUUCUUGUCUauuuuuccaauuuauugacaacgaagaggcguuuuuccgugau
....(((.(((((((.((....(((((((.....((((((.((((......(((((((.(((((.(((((((((.........)))))))))))))).))))))).......))))))))))))).)))).....)).))))))).)))

Structure

cgag   u       u  -aagg    -   ugcag      a    -caacuU       U     C         agu 
    auu ugggaga ug     ucgu guu     agugaa uugg       GGCAAGA GUUGG AUAGCUGAa   u
    ||| ||||||| ||     |||| |||     |||||| ||||       ||||||| ||||| |||||||||   u
    uag gccuuuu gc     agca cag     uuauuu aacc       CUGUUCU CAACU UAUCGAUuu   u
----   u       u  ggaga    a   -----      -    uuuuuaU       U     -         gag 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001811392.1|: 483181-483329 [-]

Mature aae-miR-31-5p

• Accession: MIMAT0014276
• Description: Aedes aegypti aae-miR-31-5p mature miRNA
• Sequence: 51 - UGGCAAGAUGUUGGCAUAGCUGA - 73
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-31-3p

• Accession: MIMAT0057342
• Description: Aedes aegypti aae-miR-31-3p mature miRNA
• Sequence: 86 - UAGCUAUUCAACUUCUUGUCU - 106
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119