Stem-loop aae-mir-932

Accession

MI0013475

Description

Aedes aegypti aae-mir-932 precursor miRNA

Literature search

2 open access papers mention aae-mir-932
(8 sentences)

Sequence

95721 reads, 4908 reads per million, 2 experiments

guaaucauagaauagcuUCAAUUCCGUAGUGCAUUGCAGugugcuuuagacgaacUGCAAGCAAUGUGGAAGUGAAGcgauucucaaugaucauc
...((((((((((.((((((.(((((((.(((.(((((((.............)))))))))).))))))).)))))).)))))..)))))....

Structure

-gua     --     a      A       G   A       gugcu 
    aucau  agaau gcuUCA UUCCGUA UGC UUGCAGu     u
    |||||  ||||| |||||| ||||||| ||| |||||||     u
    uagua  ucuua cGAAGU AAGGUGU ACG AACGUca     a
cuac     ac     g      G       A   -       agcag 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.1064: 154098-154192 [-]

Mature aae-miR-932-5p

• Accession: MIMAT0014269
• Description: Aedes aegypti aae-miR-932-5p mature miRNA
• Sequence: 18 - UCAAUUCCGUAGUGCAUUGCAG - 39
• Evidence: experimental ; Illumina [2]

Mature aae-miR-932-3p

• Accession: MIMAT0014270
• Description: Aedes aegypti aae-miR-932-3p mature miRNA
• Sequence: 56 - UGCAAGCAAUGUGGAAGUGAAG - 77
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119