miRBase entry: aae-mir-965

Stem-loop aae-mir-965


Accession
MI0013474
Description
Aedes aegypti aae-mir-965 precursor miRNA

Literature search
1 open access papers mention aae-mir-965
(3 sentences)

Sequence

555 reads, 29 reads per million, 2 experiments
gauucugaagggggaaauccuguacgcuguauguuguauuugaauaauccaUAAGCGUAUAGCUUUUCCCAUUcggcgu
....(((((..((((((..(((((((((.((((((((......))))..)))))))))))))..)))))).)))))...

Structure
gauu     gg      uc         g    --    au 
    cugaa  gggaaa  cuguacgcu uaug  uugu  u
    |||||  ||||||  ||||||||| ||||  ||||   
    ggcUU  CCCUUU  GAUAUGCGA AUac  aaua  u
-ugc     -A      UC         -    cu    ag 


Annotation confidence Not enough data
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Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.51: 2008650-2008728 [+]

Database links

Mature aae-miR-965

Accession MIMAT0014268
Description Aedes aegypti aae-miR-965 mature miRNA
Sequence 52 - UAAGCGUAUAGCUUUUCCCAUU - 73
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119