Stem-loop aae-mir-965

Accession

MI0013474

Description

Aedes aegypti aae-mir-965 precursor miRNA

Literature search

1 open access papers mention aae-mir-965
(3 sentences)

Sequence

555 reads, 29 reads per million, 2 experiments

gauucugaagggggaaauccuguacgcuguauguuguauuugaauaauccaUAAGCGUAUAGCUUUUCCCAUUcggcgu
....(((((..((((((..(((((((((.((((((((......))))..)))))))))))))..)))))).)))))...

Structure

gauu     gg      uc         g    --    au 
    cugaa  gggaaa  cuguacgcu uaug  uugu  u
    |||||  ||||||  ||||||||| ||||  ||||   
    ggcUU  CCCUUU  GAUAUGCGA AUac  aaua  u
-ugc     -A      UC         -    cu    ag 

Annotation confidence Not enough data

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.51: 2008650-2008728 [+]

Mature aae-miR-965

• Accession: MIMAT0014268
• Description: Aedes aegypti aae-miR-965 mature miRNA
• Sequence: 52 - UAAGCGUAUAGCUUUUCCCAUU - 73
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119