Stem-loop aae-mir-1175

Accession

MI0013470

Description

Aedes aegypti aae-mir-1175 precursor miRNA

Literature search

6 open access papers mention aae-mir-1175
(24 sentences)

Sequence

327778 reads, 1342.0 reads per million, 84 experiments

acgauaugaaauAAGUGGAGUAGUGGUCUCAUCGCUuaguauuagaaaagUGAGAUUCUACUUCUCCGACUUaauucauaucua
..((((((((.(((((((((.(((((..((.((((((..........))))))))..))))).)))).))))).))))))))..

Structure

ac        a     -    U     UC  A      agua 
  gauaugaa uAAGU GGAG AGUGG  UC UCGCUu    u
  |||||||| ||||| |||| |||||  || ||||||     
  cuauacuu aUUCA CCUC UCAUC  AG AGUgaa    u
au        a     G    U     UU  -      aaga 

Annotation confidence Medium

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

ref|NW_001810078.1|: 1648025-1648108 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aae-mir-1175

Mature aae-miR-1175-5p

• Accession: MIMAT0014264
• Description: Aedes aegypti aae-miR-1175-5p mature miRNA
• Sequence: 13 - AAGUGGAGUAGUGGUCUCAUCGCU - 36
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-1175-3p

• Accession: MIMAT0015371
• Description: Aedes aegypti aae-miR-1175-3p mature miRNA
• Sequence: 51 - UGAGAUUCUACUUCUCCGACUU - 72
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119