miRBase entry: aae-mir-1891-1

Stem-loop aae-mir-1891-1


Accession
MI0013468
Description
Aedes aegypti aae-mir-1891-1 precursor miRNA

Literature search
2 open access papers mention aae-mir-1891-1
(8 sentences)

Sequence

28136 reads, 1417 reads per million, 2 experiments
cuuuuuccgucauguUGAGGAGUUAAUUUGCGUGUUUuuguauuugauuaaacacguccauuaacucugguacaugaugauaaaagc
(((((..((((((((...(((((((((..((((((((............))))))))..)))))))))...))))))))..))))).

Structure
-     uc        UGA         UU        uugua 
 cuuuu  cgucaugu   GGAGUUAAU  GCGUGUUU     u
 |||||  ||||||||   |||||||||  ||||||||      
 gaaaa  guaguaca   ucucaauua  ugcacaaa     u
c     ua        ugg         cc        uuagu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.199: 1109700-1109786 [-]

Database links

Mature aae-miR-1891

Accession MIMAT0014263
Description Aedes aegypti aae-miR-1891 mature miRNA
Sequence 16 - UGAGGAGUUAAUUUGCGUGUUU - 37
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119