Stem-loop aae-mir-308

Accession

MI0013466

Description

Aedes aegypti aae-mir-308 precursor miRNA

Literature search

2 open access papers mention aae-mir-308
(14 sentences)

Sequence

14515 reads, 730 reads per million, 2 experiments

agcgcuguuuCGCGGUAUAUUCUUGUGGCUUGaugcauuugaaaaaucucaAAUCACAGGAGUAUACUGugagaga
.......(((((((((((((((((((((.((((.(.((((...))))))))).)))))))))))))))))))))..

Structure

agcgcug                     C    u c    g 
       uuuCGCGGUAUAUUCUUGUGG UUGa g auuu  
       ||||||||||||||||||||| |||| | |||| a
       agaguGUCAUAUGAGGACACU Aacu c uaaa  
-----ag                     A    - -    a 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.107: 508970-509045 [+]

Mature aae-miR-308-5p

• Accession: MIMAT0014260
• Description: Aedes aegypti aae-miR-308-5p mature miRNA
• Sequence: 11 - CGCGGUAUAUUCUUGUGGCUUG - 32
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-308-3p

• Accession: MIMAT0014261
• Description: Aedes aegypti aae-miR-308-3p mature miRNA
• Sequence: 52 - AAUCACAGGAGUAUACUG - 69
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119