Stem-loop aae-mir-1

Accession

MI0013455

Description

Aedes aegypti aae-mir-1 precursor miRNA

Literature search

7 open access papers mention aae-mir-1
(15 sentences)

Sequence

10325877 reads, 530586 reads per million, 2 experiments

cgaaaguuccaugcuuccuugcauucaauagugauucugaaagcauaUGGAAUGUAAAGAAGUAUGGAGcgcucgg
(((..((((((((((((.((((((((.(((((..........)).))).)))))))).))))))))))))..))).

Structure

-   aa            c        a   -  gauu 
 cga  guuccaugcuuc uugcauuc aua gu    c
 |||  |||||||||||| |||||||| ||| ||     
 gcu  cGAGGUAUGAAG AAUGUAAG Uau cg    u
g   cg            A        G   a  aaag 

Annotation confidence Not enough data

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.812: 291326-291401 [+]

Mature aae-miR-1

• Accession: MIMAT0014244
• Description: Aedes aegypti aae-miR-1 mature miRNA
• Sequence: 48 - UGGAAUGUAAAGAAGUAUGGAG - 69
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119