Stem-loop aae-mir-980

Accession

MI0013449

Description

Aedes aegypti aae-mir-980 precursor miRNA

Literature search

2 open access papers mention aae-mir-980
(6 sentences)

Sequence

1408 reads, 74 reads per million, 2 experiments

acuacaauuCGGCCGUUCAUUGGGUCAUCUAGCucguguuggaaacaguUAGCUGCCUAGUGAAGGGCaauauugu
...(((((...(((.(((((((((.((.((((((.((.......)))))))).))))))))))).)))...)))))

Structure

acu     uCG   G         U  U      c  gu 
   acaau   GCC UUCAUUGGG CA CUAGCu gu  u
   |||||   ||| ||||||||| || |||||| ||  g
   uguua   CGG AAGUGAUCC GU GAUuga ca  g
---     uaa   G         -  C      -  aa 

Annotation confidence High

Comments

This miRNA was experimentally identified in the closely related Aedes albopictus, for which there was no genome sequence, and therefore mapped to the Aedes aegypti genome [1].

Genome context

supercont1.23: 1043020-1043095 [+]

Mature aae-miR-980-5p

• Accession: MIMAT0014235
• Description: Aedes aegypti aae-miR-980-5p mature miRNA
• Sequence: 10 - CGGCCGUUCAUUGGGUCAUCUAGC - 33
• Evidence: experimental ; Illumina [1]

Mature aae-miR-980-3p

• Accession: MIMAT0014236
• Description: Aedes aegypti aae-miR-980-3p mature miRNA
• Sequence: 50 - UAGCUGCCUAGUGAAGGGC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119