Accession
MI0013446
Description
Aedes aegypti
aae-mir-306 precursor miRNA
Literature search
4 open access papers mention aae-mir-306
(28 sentences)
(28 sentences)
Sequence
2190
reads,
110
reads per million, 2 experiments
cauucgcaauuucaccgguUCAGGUACUGAGUGACUCUCAGaugugcauuucucaagcaaucucguccucaggaccugagguugaaaaacccuGAGAGCACCUCGGUAUCUAAGCcaguguugcgaaaa
..(((((((...(((.((((.((((((((((((.(((((((...(((.........)))...(((.((((((...)))))).)))......))))))))).)))))))))).)))).))))))))))..
..(((((((...(((.((((.((((((((((((.(((((((...(((.........)))...(((.((((((...)))))).)))......))))))))).)))))))))).)))).))))))))))..
Structure
ca uuu c C - A augugcauuucucaagcaauc u g uucgcaa cac gguU AGGUACUGAG UG CUCUCAG ucg ccucag ||||||| ||| |||| |||||||||| || ||||||| ||| |||||| a aagcguu gug cCGA UCUAUGGCUC AC GAGAGuc agu ggaguc aa --- a A C - ---------------ccaaaa u c
Annotation confidence
High
Do you think this miRNA is real?
Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].
Genome context
supercont1.785: 213059-213187 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from aae-mir-306
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature aae-miR-306-5p
| Accession | MIMAT0014229 |
| Description | Aedes aegypti aae-miR-306-5p mature miRNA |
| Sequence | 20 - UCAGGUACUGAGUGACUCUCAG - 41 |
| Evidence |
experimental
454 [1], Illumina [2] |
Mature aae-miR-306-3p
| Accession | MIMAT0014230 |
| Description | Aedes aegypti aae-miR-306-3p mature miRNA |
| Sequence | 94 - GAGAGCACCUCGGUAUCUAAGC - 115 |
| Evidence |
experimental
Illumina [2] |
References
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