miRBase entry: aae-mir-92a

Stem-loop aae-mir-92a


Accession
MI0013445
Description
Aedes aegypti aae-mir-92a precursor miRNA

Literature search
1 open access papers mention aae-mir-92a
(10 sentences)

Sequence

12186 reads, 625 reads per million, 2 experiments
aaucuacgcauCGGUACGGACAGGGGCAACAUUgugacauuugaaagcuaaUAUUGCACUUGUCCCGGCCUAugcguggagu
..(((((((((.(((..(((((((.((((.(((((...........)).))).)))).)))))))..))).)))))))))..

Structure
aa         C   AC       G    C   -  gaca 
  ucuacgcau GGU  GGACAGG GCAA AUU gu    u
  ||||||||| |||  ||||||| |||| ||| ||    u
  aggugcguA CCG  CCUGUUC CGUU Uaa cg    u
ug         U   GC       A    A   u  aaag 


Annotation confidence High
Do you think this miRNA is real?
Comments
This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context
supercont1.116: 1267202-1267283 [+]

Database links

Mature aae-miR-92a-5p

Accession MIMAT0015369
Description Aedes aegypti aae-miR-92a-5p mature miRNA
Sequence 12 - CGGUACGGACAGGGGCAACAUU - 33
Evidence experimental
454 [1]

Mature aae-miR-92a-3p

Accession MIMAT0014228
Description Aedes aegypti aae-miR-92a-3p mature miRNA
Sequence 52 - UAUUGCACUUGUCCCGGCCUA - 72
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119