Stem-loop aae-mir-92a

Accession

MI0013445

Description

Aedes aegypti aae-mir-92a precursor miRNA

Literature search

1 open access papers mention aae-mir-92a
(10 sentences)

Sequence

12186 reads, 625 reads per million, 2 experiments

aaucuacgcauCGGUACGGACAGGGGCAACAUUgugacauuugaaagcuaaUAUUGCACUUGUCCCGGCCUAugcguggagu
..(((((((((.(((..(((((((.((((.(((((...........)).))).)))).)))))))..))).)))))))))..

Structure

aa         C   AC       G    C   -  gaca 
  ucuacgcau GGU  GGACAGG GCAA AUU gu    u
  ||||||||| |||  ||||||| |||| ||| ||    u
  aggugcguA CCG  CCUGUUC CGUU Uaa cg    u
ug         U   GC       A    A   u  aaag 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.116: 1267202-1267283 [+]

Mature aae-miR-92a-5p

• Accession: MIMAT0015369
• Description: Aedes aegypti aae-miR-92a-5p mature miRNA
• Sequence: 12 - CGGUACGGACAGGGGCAACAUU - 33
• Evidence: experimental ; 454 [1]

Mature aae-miR-92a-3p

• Accession: MIMAT0014228
• Description: Aedes aegypti aae-miR-92a-3p mature miRNA
• Sequence: 52 - UAUUGCACUUGUCCCGGCCUA - 72
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119