Stem-loop aae-mir-71

Accession

MI0013440

Description

Aedes aegypti aae-mir-71 precursor miRNA

Literature search

1 open access papers mention aae-mir-71
(1 sentences)

Sequence

159175 reads, 8198 reads per million, 2 experiments

cggcaAGAAAGACAUGGGUAGUGAGAUaguuucacccuauugcacugggaUCUCACUACCUUGUCUUUCAUGcugau
(((((.((((((((.((((((((((((.......(((.........))))))))))))))))))))))).)))))..

Structure

--     A        U            aguuuca   uau 
  cggca GAAAGACA GGGUAGUGAGAU       ccc   u
  ||||| |||||||| ||||||||||||       |||   g
  gucGU CUUUCUGU UCCAUCACUCUa       ggg   c
ua     A        -            -------   uca 

Annotation confidence High

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.268: 889378-889454 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from aae-mir-71

Mature aae-miR-71-5p

• Accession: MIMAT0014220
• Description: Aedes aegypti aae-miR-71-5p mature miRNA
• Sequence: 6 - AGAAAGACAUGGGUAGUGAGAU - 27
• Evidence: experimental ; 454 [1], Illumina [2]

Mature aae-miR-71-3p

• Accession: MIMAT0014221
• Description: Aedes aegypti aae-miR-71-3p mature miRNA
• Sequence: 51 - UCUCACUACCUUGUCUUUCAUG - 72
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119