Stem-loop aae-mir-9c

Accession

MI0013436

Description

Aedes aegypti aae-mir-9c precursor miRNA

Literature search

1 open access papers mention aae-mir-9c
(1 sentences)

Sequence

4535 reads, 287 reads per million, 2 experiments

cugaaUCUUUGGUAUUCUAGCUGUAGAauguugagcuuugugauaugguaucuucUAAAGCUUUAGUACCAGAGGUCcaacug
.((.((((((((((((..((((.(((((.((...(((.........))))).))))).))))..)))))))))))).))....

Structure

---c  a            CU    G     u  uga   uug 
    ug aUCUUUGGUAUU  AGCU UAGAa gu   gcu   u
    || ||||||||||||  |||| ||||| ||   |||   g
    ac UGGAGACCAUGA  UCGA AUcuu ua   ugg   a
guca  C            UU    A     c  ---   uau 

Annotation confidence Not enough data

Comments

Skalsky et al. experimentally identified in the closely related Aedes albopictus, for which there was no genome sequence, and therefore mapped to the Aedes aegypti genome [1].

Genome context

Unknown

Mature aae-miR-9c-5p

• Accession: MIMAT0014212
• Description: Aedes aegypti aae-miR-9c-5p mature miRNA
• Sequence: 6 - UCUUUGGUAUUCUAGCUGUAGA - 27
• Evidence: experimental ; Illumina [1]

Mature aae-miR-9c-3p

• Accession: MIMAT0014213
• Description: Aedes aegypti aae-miR-9c-3p mature miRNA
• Sequence: 56 - UAAAGCUUUAGUACCAGAGGUC - 77
• Evidence: experimental ; Illumina [1], 454 [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119