miRBase entry: aae-mir-9c

Stem-loop aae-mir-9c


Accession
MI0013436
Description
Aedes aegypti aae-mir-9c precursor miRNA

Literature search
1 open access papers mention aae-mir-9c
(1 sentences)

Sequence

4535 reads, 287 reads per million, 2 experiments
cugaaUCUUUGGUAUUCUAGCUGUAGAauguugagcuuugugauaugguaucuucUAAAGCUUUAGUACCAGAGGUCcaacug
.((.((((((((((((..((((.(((((.((...(((.........))))).))))).))))..)))))))))))).))....

Structure
---c  a            CU    G     u  uga   uug 
    ug aUCUUUGGUAUU  AGCU UAGAa gu   gcu   u
    || ||||||||||||  |||| ||||| ||   |||   g
    ac UGGAGACCAUGA  UCGA AUcuu ua   ugg   a
guca  C            UU    A     c  ---   uau 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Skalsky et al. experimentally identified in the closely related Aedes albopictus, for which there was no genome sequence, and therefore mapped to the Aedes aegypti genome [1].

Genome context
Unknown

Database links

Mature aae-miR-9c-5p

Accession MIMAT0014212
Description Aedes aegypti aae-miR-9c-5p mature miRNA
Sequence 6 - UCUUUGGUAUUCUAGCUGUAGA - 27
Evidence experimental
Illumina [1]

Mature aae-miR-9c-3p

Accession MIMAT0014213
Description Aedes aegypti aae-miR-9c-3p mature miRNA
Sequence 56 - UAAAGCUUUAGUACCAGAGGUC - 77
Evidence experimental
Illumina [1], 454 [2]

References

  1. PubMed ID: 19961592
    Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
    Li S, Mead EA, Liang S, Tu Z
    BMC Genomics (2009) 10:581

  2. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119