Stem-loop rco-MIR172

Accession

MI0013405

Description

Ricinus communis rco-MIR172 precursor miRNA

Literature search

3 open access papers mention rco-MIR172
(11 sentences)

Sequence

cugauggagcaucaucaagauucacaaacuuuaucuagggcuaguggguuguuguggucccuuuucuuuuucuuuuuuucuuuuucucuugcuucaauccaauagucccuuugauaugGGAAUCUUGAUGAUGCUGCAGcggca
(((.((.((((((((((((((((.((.....((((.(((((((.(((((((..((((...............................))))..))))))).))).))))..)))))).)))))))))))))))).)).)))..

Structure

--   a  g                a  aacuu    -u    -   g       uu    ucccuuuucuuuuu 
  cug ug agcaucaucaagauuc ca     uauc  aggg cua uggguug  gugg              c
  ||| || |||||||||||||||| ||     ||||  |||| ||| |||||||  ||||              u
  ggc AC UCGUAGUAGUUCUAAG gu     auag  uccc gau accuaac  cguu              u
ac   G  G                G  -----    uu    u   a       uu    cucuuuuucuuuuu 

Annotation confidence Not enough data

Genome context

EQ974292.1: 52781-52924 [+]

Mature rco-miR172

• Accession: MIMAT0014179
• Description: Ricinus communis rco-miR172 mature miRNA
• Sequence: 119 - GGAAUCUUGAUGAUGCUGCAG - 139
• Evidence: experimental ; RT-PCR [1]

References

1. PubMed ID: 19942686
   Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants
   "Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M"
   "Nucleic Acids Res (2010) 38:981-995