miRBase entry: bma-mir-281

Stem-loop bma-mir-281


Accession
MI0013349
Description
Brugia malayi bma-mir-281 precursor miRNA


Sequence

ggugaacgcagacgacaAAGAGAGCCAUCUGUUGACAGUcauauauugcaacUGUCAUGGAAUUGCUCUCUUUAcaugccuguguucuaag
...((((((((.((..(((((((((..(((((.((((((((.....))..)))))))))))...)))))))))...)).))))))))....

Structure
-ggu        a  -ac         -CA     U      --  u 
    gaacgcag cg   aAAGAGAGC   UCUGU GACAGU  ca a
    |||||||| ||   |||||||||   ||||| ||||||  || u
    cuuguguc gu   UUUCUCUCG   AGGUA CUGUca  gu a
gaau        c  acA         UUA     -      ac  u 


Annotation confidence Not enough data
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Genome context
Bmal_v3_scaffold18: 454490-454580 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-281
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-281-3p

Accession MIMAT0014123
Description Brugia malayi bma-miR-281-3p mature miRNA
Sequence 53 - UGUCAUGGAAUUGCUCUCUUUA - 74
Evidence experimental
Illumina [2]

Mature bma-miR-281-5p

Accession MIMAT0037378
Description Brugia malayi bma-miR-281-5p mature miRNA
Sequence 18 - AAGAGAGCCAUCUGUUGACAGU - 39
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19874857
    Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
    "Poole CB, Davis PJ, Jin J, McReynolds LA"
    "Mol Biochem Parasitol (2010) 169:87-94

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498