miRBase entry: bma-mir-279

Stem-loop bma-mir-279


Accession
MI0013348
Description
Brugia malayi bma-mir-279 precursor miRNA

Literature search
2 open access papers mention bma-mir-279
(6 sentences)

Sequence

ucauucguagcugagcaugguucuuagucauguggcauguaagagauucaUGACUAGAACCAUACUCAGCuaugugacccggcauucuuaa
(((..((((((((((.((((((((.(((((((...(........)...))))))))))))))).)))))))))))))..............

Structure
--------------   uu          c        u       ugg aug 
              uca  cguagcugag augguucu agucaug   c   u
              |||  |||||||||| |||||||| |||||||   |    
              agu  guauCGACUC UACCAAGA UCAGUac   g   a
aauucuuacggccc   --          A        -       uua aga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Bmal_v3_scaffold435: 4948-5038 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from bma-mir-279
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-279

Accession MIMAT0014122
Description Brugia malayi bma-miR-279 mature miRNA
Sequence 51 - UGACUAGAACCAUACUCAGC - 70
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 19874857
    Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
    "Poole CB, Davis PJ, Jin J, McReynolds LA"
    "Mol Biochem Parasitol (2010) 169:87-94

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498