Stem-loop bma-mir-228

Accession

MI0013346

Description

Brugia malayi bma-mir-228 precursor miRNA

Literature search

4 open access papers mention bma-mir-228
(12 sentences)

Sequence

17101 reads, 610.0 reads per million, 25 experiments

ugcuggcacauacucAAUGGCACUAGAUGAAUUCACGGuucaccucuccuauccGUGUAUUCGCCAGUUCCAUAGAgcugugcaagua
((((.(((((..(((.((((.(((.(.(((((.(((((..............))))).)))))).))).)))).))).))))).))))

Structure

    g     ua   A    C   A A     U     uucacc 
ugcu gcaca  cuc AUGG ACU G UGAAU CACGG      u
|||| |||||  ||| |||| ||| | ||||| |||||       
auga cgugu  gAG UACC UGA C GCUUA GUGcc      c
    a     -c   A    U   C -     U     uauccu 

Annotation confidence High

Genome context

Bmal_v3_scaffold9: 494383-494470 [+]

Mature bma-miR-228-5p

• Accession: MIMAT0014120
• Description: Brugia malayi bma-miR-228-5p mature miRNA
• Sequence: 16 - AAUGGCACUAGAUGAAUUCACGG - 38
• Evidence: experimental ; Illumina [2]

Mature bma-miR-228-3p

• Accession: MIMAT0057218
• Description: Brugia malayi bma-miR-228-3p mature miRNA
• Sequence: 55 - GUGUAUUCGCCAGUUCCAUAGA - 76
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498