miRBase entry: bma-mir-228

Stem-loop bma-mir-228


Accession
MI0013346
Description
Brugia malayi bma-mir-228 precursor miRNA

Literature search
1 open access papers mention bma-mir-228
(2 sentences)

Sequence

ugcuggcacauacucAAUGGCACUAGAUGAAUUCACGGuucaccucuccuauccguguauucgccaguuccauagagcugugcaagua
((((.(((((..(((.((((.(((.(.(((((.(((((..............))))).)))))).))).)))).))).))))).))))

Structure
    g     ua   A    C   A A     U     uucacc 
ugcu gcaca  cuc AUGG ACU G UGAAU CACGG      u
|||| |||||  ||| |||| ||| | ||||| |||||       
auga cgugu  gag uacc uga c gcuua gugcc      c
    a     -c   a    u   c -     u     uauccu 


Annotation confidence Not enough data
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Genome context
Bmal_v3_scaffold9: 494383-494470 [+]

Database links

Mature bma-miR-228

Accession MIMAT0014120
Description Brugia malayi bma-miR-228 mature miRNA
Sequence 16 - AAUGGCACUAGAUGAAUUCACGG - 38
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19874857
    Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
    "Poole CB, Davis PJ, Jin J, McReynolds LA"
    "Mol Biochem Parasitol (2010) 169:87-94

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498