Stem-loop bma-mir-100a

Accession

MI0013338

Description

Brugia malayi bma-mir-100a precursor miRNA

Literature search

7 open access papers mention bma-mir-100a
(26 sentences)

Sequence

9707886 reads, 46406.0 reads per million, 26 experiments

cggcauggcggcugucgguuAACCCGUAGUUUCGAACAUGUGuugauauauuagauaacACAUGUCGGUUCUCGGGUCAAuugcuuacuag
((((......)))).(((((.(((((.((..((((.(((((((((..........)))))))))))))..))))))).)))))........

Structure

cggcauggcggcugu     A     U  UU    A         auau 
               cgguu ACCCG AG  UCGA CAUGUGuug    a
               ||||| ||||| ||  |||| |||||||||     
               guuAA UGGGC UC  GGCU GUACAcaau    u
-------gaucauuc     C     -  UU    -         agau 

Annotation confidence High

Genome context

Bmal_v3_scaffold84: 109699-109789 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-100a

Mature bma-miR-100a-5p

• Accession: MIMAT0014112
• Description: Brugia malayi bma-miR-100a-5p mature miRNA
• Sequence: 21 - AACCCGUAGUUUCGAACAUGUG - 42
• Evidence: experimental ; cloned [1], Illumina [2]

Mature bma-miR-100a-3p

• Accession: MIMAT0057211
• Description: Brugia malayi bma-miR-100a-3p mature miRNA
• Sequence: 60 - ACAUGUCGGUUCUCGGGUCAA - 80
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498